PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g21255.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 179aa    MW: 20604.7 Da    PI: 8.2856
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g21255.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.64e-0815535290
              FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                      ++++++ r+ C+a +++ +++dg w++ + ++ HnH+l+
  Bradi2g21255.1.p 15 KENTKTIRCACTALIRLLRSDDGGWYICEHRETHNHPLS 53
                      6788999******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-51553IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MHAGDCLWLR GKPVKENTKT IRCACTALIR LLRSDDGGWY ICEHRETHNH PLSTTCGEKL  60
HWQSHRHIDR YTKELIKQLR ENNVSLGKVY SIIGSFFGSM DQIPFMKRSL KTLCGKISQE  120
QSDNDAVKTM DVFSKMLEAD PDFKYTAQVD DESRIKTLMW TSGRSMYQYI CFGDVLMV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-98PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0Q3H2T01e-98A0A0Q3H2T0_BRADI; Uncharacterized protein
TrEMBLA0A0Q3H2T41e-98A0A0Q3H2T4_BRADI; Uncharacterized protein
STRINGBRADI2G07910.16e-95(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.14e-12FAR1-related sequence 10